PASCAL - Pattern Analysis, Statistical Modelling and Computational Learning

EPrints submitted by Matteo Re

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Number of EPrints submitted by this user: 13

Detecting conserved coding genomic regions through signal processing of nucleotide substitution patterns.
Matteo Re and Giulio Pavesi
Artificial Intelligence in Medicine Volume 45, Number 2, pp. 117-123, 2009.

Signal Processing in Comparative Genomics
Matteo Re and Giulio Pavesi
In: Application of Fuzzy Sets Theory Lecture Notes on Artificial Intelligence , 4578/2007 (4578). (2007) Springer Berlin / Heidelberg , Germany , pp. 544-550. ISBN 978-3-540-73399-7

Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics
Matteo Re
BMC Bioinformatics Volume 10, Number 282, 2009.

A Fast Ranking Algorithm for Predicting Gene Functions in Biomolecular Networks
Matteo Re, Marco Mesiti and Giorgio Valentini
IEEE/ACM Transactions on Computational Biology and Bioinformatics Volume 9, Number 6, pp. 1812-1818, 2012. ISSN 1545-5963

Cancer module genes ranking using kernelized score functions
Matteo Re and Giorgio Valentini
BMC Bioinformatics Volume 13, Number Suppl 14, S3--, 2012. ISSN 1471-2105

Synergy of multi-label hierarchical ensembles, data fusion, and cost-sensitive methods for gene functional inference
Matteo Re, Giorgio Valentini and Nicolò Cesa-Bianchi
Machine Learning Volume 88, Number 1-2, pp. 209-241, 2012. ISSN 1573-0565

Regeneration-associated WNT signaling is activated in long-term reconstituting AC133bright acute myeloid leukemia cells
Alessandro Beghini, Francesca Corlazzoli, Luca Del Giacco, Matteo Re, Francesca Lazzaroni, Matteo Brioschi, Giorgio Valentini, Fulvia Ferrazzi, Anna Ghilardi, Marco Righi, Mauro Turrini, Marco Mignardi, Clara Cesana, Vincenzo Bronte, Mats Nilsson, Enrica Morra and Roberto Cairoli
Neoplasia Volume 14, Number 12, pp. 1236-1248, 2012. ISSN 1476-5586

A neural network algorithm for semi-supervised node label learning from unbalanced data
Marco Frasca, Alberto Bertoni, Matteo Re and Giorgio Valentini
Neural Networks Volume -, Number -, 2013. ISSN 0893-6080

A Novel Approach to the Problem of Non-uniqueness of the Solution in Hierarchical Clustering
Isabella Cattinelli, Giorgio Valentini, Eraldo Palesu and Alberto Borghese
IEEE Transactions on Neural Networks and Learning Systems Volume -, Number -, 2012.

Random walking on functional interaction networks to rank genes involved in cancer
Matteo Re and Giorgio Valentini
Artificial Intelligence Applications and Innovations - AIAI 2012 International Workshops: AIAB, AIeIA, CISE, COPA, IIVC, ISQL, MHDW, and WADTMB, Halkidiki, Greece, September 27-30, 2012, Proceedings, Part II Volume 382, pp. 66-75, 2012. ISSN 978-3-642-33411-5

Drug repositioning through pharmacological spaces integration based on networks projections
Matteo Re, Marco Mesiti and Giorgio Valentini
EMBnet.journal Volume 18, Number A, 2012.

Regularized Network-Based Algorithm for Predicting Gene Functions with High-Imbalanced Data
Marco Frasca, Alberto Bertoni and Giorgio Valentini
EMBnet.journal Volume 18, Number A, pp. 41-42, 2012.

Comparison of early and late omics data integration for cancer modules gene ranking
Matteo Re, Marco Mesiti and Giorgio Valentini
In: NETTAB 2012 workshop – Integrated Bio-Search, 14-16 Novemver 2012, Como.