PASCAL - Pattern Analysis, Statistical Modelling and Computational Learning

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update
J Bryne, E Valen, M Tang, T Marstrand, O Winther, I da Piedade, A Krogh, B Lenhard and A Sandelin
Nucleic Acids Research Volume 35, D102-D106, 2008.

Abstract

JASPAR is a popular open-access database for matrix models describing DNA-binding preferences for transcription factors and other DNA patterns. With its third major release, JASPAR has been expanded and equipped with additional functions aimed at both casual and power users. The heart of the JASPAR databasethe JASPAR CORE sub-databasehas increased by 12 in size, and three new specialized sub-databases have been added. New functions include clustering of matrix models by similarity, generation of random matrices by sampling from selected sets of existing models and a language-independent Web Service applications programming interface for matrix retrieval. JASPAR is available at http://jaspar.genereg.net.

EPrint Type:Article
Project Keyword:Project Keyword UNSPECIFIED
Subjects:Computational, Information-Theoretic Learning with Statistics
ID Code:5174
Deposited By:Ole Winther
Deposited On:24 March 2009