PASCAL - Pattern Analysis, Statistical Modelling and Computational Learning

Gene expression modelling through positive Boolean functions
Francesca Ruffino, Marco Muselli and Giorgio Valentini
International Journal of Approximate Reasoning Volume 47, Number 1, pp. 97-108, 2008.

Abstract

In the framework of gene expression data analysis, the selection of biologically relevant sets of genes and the discovery of new subclasses of diseases at bio-molecular level represent two significant problems. Unfortunately, in both cases the correct solution is usually unknown and the evaluation of the performance of gene selection and clustering methods is difficult and in many cases unfeasible. A natural approach to this complex issue consists in developing an artificial model for the generation of biologically plausible gene expression data, thus allowing to know in advance the set of relevant genes and the functional classes involved in the problem. In this work we propose a mathematical model, based on positive Boolean func- tions, for the generation of synthetic gene expression data. Despite its simplicity, this model is sufficiently rich to take account of the specific peculiarities of gene expression, including the biological variability, viewed as a sort of random source. As an applicative example, we also provide some data simulations and numerical experiments for the analysis of the performances of gene selection methods.

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EPrint Type:Article
Project Keyword:Project Keyword UNSPECIFIED
Subjects:Theory & Algorithms
ID Code:3622
Deposited By:Giorgio Valentini
Deposited On:13 February 2008